PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_9A51D1EB2.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 278aa    MW: 29967.5 Da    PI: 6.6361
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_9A51D1EB2.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1025.2e-32261182103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F+ k+y +++d++++ ++ w   gnsfvv d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g
  Traes_4DL_9A51D1EB2.2  26 FVAKTYGMMDDRATDGVVAWGPAGNSFVVADPFAFSEMLLPAHFKHANFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRG 104
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +++ll++i r++s+
  Traes_4DL_9A51D1EB2.2 105 QTHLLRRIVRRQSS 118
                            ***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-3522115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3122115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-4822115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-172649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MMSGGVSGVE SSSSSGSCGA AGVAPFVAKT YGMMDDRATD GVVAWGPAGN SFVVADPFAF  60
SEMLLPAHFK HANFSSFVRQ LNTYGFRKVD PDRWEFAHAS FLRGQTHLLR RIVRRQSSKR  120
GKDSKEEEDD DGSSSATALA MEVVRLRNEQ RAAEERVAAM WRRVQETERR PKQMLAFLLK  180
VVGDPDVLRR LAGEGAGAGD KRPRLLLDGR QEQRMSVDGA GVGVVGLSYH NHSNLNLEEA  240
YVLEPGVDLY CAGGDAQADG GGGGAAPPPY AFHVDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D5e-25811511129Heat shock factor protein 1
5d5v_B5e-25811511129Heat shock factor protein 1
5d5u_B5e-25811511129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3681201e-162AK368120.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068I23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.11e-92heat shock factor protein 1
SwissprotQ6EUG49e-89HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A096URE10.0A0A096URE1_WHEAT; Uncharacterized protein
STRINGMLOC_68417.11e-119(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]